The Price of Amortized inference in Sparse Autoencoders

Polysemy has long been a major challenge in Mechanistic Interpretability (MI), with Sparse Autoencoders (SAEs) emerging as a promising solution. SAEs employ a shared encoder to map inputs to sparse codes, thereby amortizing inference costs across all instances. However, this parameter-sharing paradigm inherently conflicts with the MI community’s emphasis on instance-level optimality, including the consistency and stitchability of monosemantic features. We first reveal the trade-off relationships among various pathological phenomena, including feature absorption, feature splitting, dead latents, and dense latents under global reconstruction-sparsity constraints from the perspective of training dynamics, finding that increased sparsity typically exacerbates multiple pathological phenomena, and attribute this trade-off relationship to amortized inference. By reducing reliance on amortized inference through the introduction of semi-amortized and non-amortized approaches, we observed that various pathological indicators were significantly mitigated, thereby validating our hypothesis. As the first step in this direction, we propose Local Amortized SAE (LocA-SAE), a method that groups polysemantically close latents based on the angular variance. This method is designed to balance the computational cost of per-sample optimization with the limitations of amortized inference. Our work provides insights for understanding SAEs and advocates for a paradigm shift in future research on polysemy disentanglement. The code is available \url{https://github.com/wenjie1835/LocalAmotizedSAEs}.