SafeMERGE: Preserving Safety Alignment in Fine-Tuned Large Language Models via Selective Layer-Wise Model Merging

Fine-tuning large language models (LLMs) on downstream tasks can inadvertently erode their safety alignment, even for benign fine-tuning datasets. We address this challenge by proposing SafeMERGE, a post–fine-tuning framework that preserves safety while maintaining task utility. It achieves this by selectively merging fine-tuned and safety-aligned model layers only when those deviate from safe behavior, measured by a cosine similarity criterion. We evaluate SafeMERGE against other fine-tuning- and post–fine-tuning-stage approaches for Llama-2-7B-Chat and Qwen-2-7B-Instruct models on GSM8K and PubMedQA tasks while exploring different merging strategies. We find that SafeMERGE consistently reduces harmful outputs compared to other baselines without significantly sacrificing performance, sometimes even enhancing it. The results suggest that our selective, subspace-guided, and per-layer merging method provides an effective safeguard against the inadvertent loss of safety in fine-tuned LLMs while outperforming simpler post–fine-tuning-stage defenses.